rs12746483 chr1:1080437 G>A
- Sequence
gtttgggccactgggtgggaggag[G/A]aggaggggacccagaattgagaga
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- MNT_HUMAN RBM25_HUMAN ESR1_HUMAN NRF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | -0.54 | 2.16 | 1.25 | n/a | No Hit | |||
| RBM25_HUMAN | n/a | 2.82 | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | -0.22 | 1.23 | 1.84 | n/a | No Hit | |||
| NRF1_HUMAN | -0.03 | 2.02 | 1.00 | n/a | No Hit | |||
| ILF3_HUMAN | -0.47 | 1.87 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Whole_Blood