rs12757307 chr1:92934792 G>A

Sequence
caaaattaaacagacatccctagg[G/A]atacagatttgccaagagagttcc
ASB in cell types
HEK293 (embryonic kidney) HEK293-A SK-N-SH (neuroblastoma)
ASB for transcription factors
MEF2B_HUMAN ZN629_HUMAN PRDM6_HUMAN COE3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MEF2B_HUMAN 2.33 -4.79 2.5·10-61.00 2.50 n/a No Hit
ZN629_HUMAN 3.72 n/a 4.2·10-51.00 2.00 n/a n/a
PRDM6_HUMAN 2.04 n/a 4.0·10-31.00 2.00 n/a No Hit
COE3_HUMAN 2.37 -4.16 5.2·10-31.00 1.50 -5.86 Concordant
Items per page:
1 – 4 of 4

Motif analysis

COE3_HUMAN Concordant
COE3_HUMAN pic

Genetic associations

GRASP height,  ldl cholesterol,  serum creatinine,  total cholesterol,  years of education
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Thyroid

Download