rs12806698 chr11:4094744 C>A
- Sequence
cacgtcgcctgtcagtctgtgaag[C/A]ctaccccgggcgtgggccgcagcg
- ASB in cell types
- GM12891 (male B- cells lymphoblastoid cell line) adult erythroblasts CD14+ monocytes GM12892 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- HCFC1_HUMAN TYY1_HUMAN STAG1_HUMAN ZNF76_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HCFC1_HUMAN | 1.02 | n/a | 2.00 | n/a | n/a | |||
| TYY1_HUMAN | 1.55 | 0.26 | 1.35 | n/a | No Hit | |||
| STAG1_HUMAN | 0.54 | -0.69 | 1.00 | n/a | n/a | |||
| ZNF76_HUMAN | 1.28 | -1.28 | 1.00 | n/a | No Hit | |||
| TBP_HUMAN | -0.43 | 1.11 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP acute lung injury following major trauma, advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, bipolar disorder, ldl cholesterol, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Spleen, Thyroid, Uterus, Whole_Blood