rs12857 chr12:120496143 T>G

Sequence
gccacggtttcggtagcgacggta[T/G]ctctagccgggcctgagctgtgct
ASB in cell types
HepG2 (hepatoblastoma) primary B-CLL cells breast tumor LNCaP (prostate carcinoma)
ASB for transcription factors
TBP_HUMAN ESR1_HUMAN BRD4_HUMAN TAL1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TBP_HUMAN -0.01 0.83 1.005.1·10-4 1.06 n/a No Hit
ESR1_HUMAN -0.48 2.42 0.971.7·10-3 1.94 n/a No Hit
BRD4_HUMAN 0.29 2.42 0.780.01 1.64 n/a n/a
TAL1_HUMAN -1.82 2.22 1.000.02 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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