rs12896 chr14:103334467 C>T
- Sequence
cctccccgctgctcggcggcggca[C/T]ctggcccggccgctcctcgctgcg
- ASB in cell types
- HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma) breast tumor CD14+ monocytes
- ASB for transcription factors
- TYY1_HUMAN EP300_HUMAN ANDR_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 3.36 | 0.55 | 1.33 | n/a | No Hit | |||
| EP300_HUMAN | -1.07 | 1.71 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.08 | 0.27 | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 2.00 | -1.08 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood