rs1294015 chr1:9267328 T>G
- Sequence
gcactgccgcctcctgactgcccc[T/G]atccccgcagcccctgtgccggat
- ASB in cell types
- HEK293 (embryonic kidney) GM12891 (male B- cells lymphoblastoid cell line) GM02610 (Lymphoblastoid Cell Lines) GM18526 (B – cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- STAG1_HUMAN ZBT17_HUMAN CTCF_HUMAN KLF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 0.32 | 1.29 | 1.09 | n/a | n/a | |||
| ZBT17_HUMAN | -3.01 | 2.89 | 1.00 | -2.98 | Discordant | |||
| CTCF_HUMAN | 0.62 | 0.92 | 1.43 | n/a | No Hit | |||
| KLF1_HUMAN | -1.00 | 2.41 | 1.50 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Small_Intestine_Terminal_Ileum, Thyroid, Whole_Blood