rs13093 chr1:84506286 G>T
- Sequence
gccctctgttccagctccacaccc[G/T]gccccgagcgcgagcctggaggag
- ASB in cell types
- breast tumor naive IgD+ B cells 22RV1 (prostate carcinoma) CD34+ hematopoietic stem cells
- ASB for transcription factors
- ESR1_HUMAN ANDR_HUMAN FOXP1_HUMAN PRGR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 3.11 | 0.00 | 1.50 | 4.35 | Discordant | |||
| ANDR_HUMAN | 2.40 | -5.07 | 3.00 | n/a | No Hit | |||
| FOXP1_HUMAN | 2.28 | 0.75 | 1.67 | n/a | No Hit | |||
| PRGR_HUMAN | 2.41 | 0.08 | 1.50 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Whole_Blood