rs13120295 chr4:2963884 G>C
- Sequence
ctcccctgctggtgagggcctgcg[G/C]aggcggcggcggcggcgcccttgg
- ASB in cell types
- adrenal gland 2588 (Lymphoblastoid Cell Lines) upper lobe of left lung glioblastoma cells
- ASB for transcription factors
- NRF1_HUMAN CTCF_HUMAN EGR1_HUMAN MNT_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | n/a | 2.69 | 2.00 | 5.61 | Concordant | |||
| CTCF_HUMAN | 0.70 | 1.53 | 1.22 | n/a | No Hit | |||
| EGR1_HUMAN | 1.95 | -0.06 | 2.00 | -3.49 | Concordant | |||
| MNT_HUMAN | 1.97 | 0.07 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood