rs13127236 chr4:39527318 T>A
- Sequence
cagcaagcgcagggaccgctccta[T/A]cccgatcgttcggacagcaccttc
- ASB in cell types
- LNCaP C4-2B (prostate carcinoma)
- ASB for transcription factors
- ZFX_HUMAN STAG1_HUMAN SMAD3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | -0.10 | 1.89 | 1.50 | n/a | No Hit | |||
| STAG1_HUMAN | 0.00 | 1.30 | 1.00 | n/a | n/a | |||
| SMAD3_HUMAN | -0.81 | 1.86 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Whole_Blood