rs131278 chr22:29759124 A>G

Sequence
ctgagcctgaatctgggctccagg[A/G]actgcgggctggagacaagtttct
ASB in cell types
SEM (childhood B acute lymphoblastic leukemia)
ASB for transcription factors
RUNX2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RUNX2_HUMAN -3.73 2.40 1.000.03 1.33 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP aortic valve calcium,  hdl cholesterol,  irritible bowel syndrome
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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