rs13128486 chr4:139454142 C>G
- Sequence
cgcgctcttgcggtggcgtaatct[C/G]tcagcctttctgtgtctcctttcc
- ASB in cell types
- K562 (myelogenous leukemia) neutrophils from periferal blood GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- RAD21_HUMAN PKNX1_HUMAN SIN3A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 2.30 | 0.14 | 1.10 | n/a | n/a | |||
| PKNX1_HUMAN | n/a | 3.00 | 2.00 | 5.50 | Concordant | |||
| SIN3A_HUMAN | -1.91 | 2.30 | 1.00 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Uterus, Vagina