rs13130011 chr4:82901304 C>T
- Sequence
tgcaagttcttaagtgctgttagc[C/T]gagctgtgcaaggccggtccgatt
- ASB in cell types
- neutrophils from periferal blood 22RV1 (prostate carcinoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- RAD21_HUMAN ANDR_HUMAN TBP_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 3.02 | n/a | 1.50 | n/a | n/a | |||
| ANDR_HUMAN | 2.53 | -0.61 | 1.75 | 1.09 | Weak Discordant | |||
| TBP_HUMAN | 1.61 | 0.67 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid