rs13133548 chr4:88818977 G>A

Sequence
tggcaaaaggatattctaaagagc[G/A]atgcttaggaagaactgatgaatt
ASB in cell types
GM19239 (male B-cells lymphoblastoid cell line) SK-N-SH (neuroblastoma)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.46 0.75 1.000.01 1.37 n/a No Hit
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Motif analysis

No data available

Genetic associations

EMBL-EBI hdl cholesterol
GRASP adiponectin levels,  diastolic blood pressure (dbp),  fasting insulin,  hdl cholesterol,  homa-b,  homa-ir,  ldl cholesterol,  rheumatoid arthritis,  triglycerides,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Nerve_Tibial

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