rs13133886 chr4:16034172 A>C

Sequence
atataaggcgctttgcacactgca[A/C]aaatagaagttaaagattcaaagc
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
FOXA2_HUMAN SOX13_HUMAN CEBPA_HUMAN TEAD1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA2_HUMAN -0.26 1.96 1.005.9·10-6 1.60 n/a No Hit
SOX13_HUMAN -4.89 2.92 1.003.7·10-3 1.50 n/a No Hit
CEBPA_HUMAN -2.83 1.89 1.000.01 1.50 n/a No Hit
TEAD1_HUMAN -4.34 2.51 1.000.03 1.50 n/a No Hit
NFIL3_HUMAN -3.77 2.11 1.000.04 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP childhood acute lymphoblastic leukemia,  ldl cholesterol,  total cholesterol
GTEx eQTL Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Testis

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