rs131404 chr22:23541860 T>C
- Sequence
aaaacaaaaactggaggctttaca[T/C]ttattagcaaagaaacaattagaa
- ASB in cell types
- neural cell GM18951 (B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN RAD21_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.11 | 0.18 | 1.72 | n/a | No Hit | |||
| SMC3_HUMAN | 3.30 | n/a | 2.00 | n/a | n/a | |||
| RAD21_HUMAN | 2.67 | -4.89 | 2.00 | n/a | n/a | |||
| STAG1_HUMAN | 1.45 | -0.35 | 1.46 | n/a | n/a |
Items per page:
1 – 4 of 4