rs13141992 chr4:1346977 C>T

Sequence
tcggccgcgtctttgcgcctgcgc[C/T]tcctgggctggggtgagccattgg
ASB in cell types
K562 (myelogenous leukemia) CD14+ monocytes
ASB for transcription factors
STAT1_HUMAN REST_HUMAN MITF_HUMAN ATF3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 2.91 -5.02 4.0·10-51.00 2.00 n/a No Hit
REST_HUMAN n/a 2.20 1.004.1·10-5 2.00 n/a No Hit
MITF_HUMAN n/a 1.98 1.001.5·10-4 2.00 n/a No Hit
ATF3_HUMAN -0.77 1.75 1.006.8·10-3 2.00 n/a No Hit
E4F1_HUMAN n/a 2.31 1.000.01 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP diabetic retinopathy in type 2 diabetes mellitus
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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