rs13143 chr16:31477712 C>T

Sequence
ccccgcccctaaggtactatgagt[C/T]ctcaggggtcaagttcagaaacgg
ASB in cell types
K562 (myelogenous leukemia) breast tumor
ASB for transcription factors
NRF1_HUMAN ARI1B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NRF1_HUMAN 2.54 n/a 0.031.00 2.00 n/a No Hit
ARI1B_HUMAN 2.69 -5.02 0.041.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP comorbid depressive syndrome and alcohol dependence,  prop taste detection threshold
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Nucleus_accumbens_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Stomach,  Testis,  Thyroid,  Whole_Blood

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