rs13145997 chr4:67327431 G>A
- Sequence
tgcctaaagctttctcattcgctt[G/A]ccttttactgacctctagtggcca
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) WA01 (H1, human embryonic stem cells) GM12892 (female B-cells lymphoblastoid cell line) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN SMCA5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.93 | 0.56 | 1.28 | n/a | No Hit | |||
| RAD21_HUMAN | 1.13 | 0.60 | 1.26 | n/a | n/a | |||
| STAG1_HUMAN | 0.48 | 0.37 | 1.00 | n/a | n/a | |||
| SMCA5_HUMAN | 2.56 | -2.18 | 1.00 | n/a | n/a |
Items per page:
1 – 4 of 4