rs13146963 chr4:112637446 A>G
- Sequence
tgtagttcccgttttcagacagta[A/G]gggcgcataggggcccggcgtggg
- ASB in cell types
- K562 (myelogenous leukemia) GM12891 (male B- cells lymphoblastoid cell line) HeLa S3 (cervical adenocarcinoma) neutrophils
- ASB for transcription factors
- CTCF_HUMAN RBM25_HUMAN SMRC1_HUMAN CDN1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.18 | 1.76 | 1.65 | n/a | No Hit | |||
| RBM25_HUMAN | n/a | 2.67 | 1.00 | n/a | n/a | |||
| SMRC1_HUMAN | -0.82 | 1.47 | 1.00 | n/a | n/a | |||
| CDN1B_HUMAN | -0.05 | 1.86 | 1.75 | n/a | n/a | |||
| RAD21_HUMAN | 0.02 | 1.09 | 1.17 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, alcohol dependence, bipolar disorder, comorbid depressive syndrome and alcohol dependence
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood