rs13147067 chr4:25875464 A>T
- Sequence
aagattcacaccttcgtggcctac[A/T]tccccttggtcaattacaagaaca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- TBX21_HUMAN IKZF2_HUMAN NFAC3_HUMAN BHE40_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX21_HUMAN | n/a | 1.56 | 1.50 | n/a | No Hit | |||
| IKZF2_HUMAN | -1.48 | 1.54 | 1.00 | n/a | n/a | |||
| NFAC3_HUMAN | -2.35 | 2.61 | 1.00 | n/a | No Hit | |||
| BHE40_HUMAN | n/a | 1.47 | 1.50 | n/a | No Hit | |||
| RAD51_HUMAN | -2.70 | 3.06 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), birth weight, chronic kidney disease, ldl cholesterol, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid