rs13149699 chr4:184330218 A>G

Sequence
ggtatccatgagtgcgtgtcagga[A/G]agcagaagtgtcacatggacaagc
ASB in cell types
CD14+ monocytes MDM(monocyte derived macrophages) GM12891 (male B- cells lymphoblastoid cell line) sigmoid colon
ASB for transcription factors
SPI1_HUMAN STAT1_HUMAN TF65_HUMAN EP300_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 2.08 -0.10 1.1·10-71.00 1.71 -1.53 Weak Concordant
STAT1_HUMAN 3.90 n/a 1.2·10-61.00 2.00 -3.80 Concordant
TF65_HUMAN 3.09 -1.20 6.0·10-51.00 3.00 n/a No Hit
EP300_HUMAN 2.59 -2.78 5.3·10-31.00 1.50 n/a n/a
SRBP2_HUMAN 2.14 n/a 0.021.00 2.50 3.57 Discordant
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Motif analysis

STAT1_HUMAN Concordant
STAT1_HUMAN pic

Genetic associations

GRASP aortic valve calcium,  birth weight,  hdl cholesterol change with statins,  total cholesterol
GTEx eQTL Esophagus_Mucosa,  Testis,  Whole_Blood

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