rs13150957 chr4:15681695 C>T
- Sequence
tggaaaagtggagcctgcaccgcc[C/T]gctcccggcacccccggacaccgc
- ASB in cell types
- CD14+ monocytes fetal bone marrow-derived mononuclear cells foreskin keratinocyte U87 (glioblastoma)
- ASB for transcription factors
- RBM25_HUMAN STAT1_HUMAN CHD2_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | 3.13 | 0.47 | 2.00 | n/a | n/a | |||
| STAT1_HUMAN | 2.72 | 0.30 | 1.67 | n/a | No Hit | |||
| CHD2_HUMAN | 2.06 | -0.36 | 1.50 | n/a | n/a | |||
| CTCF_HUMAN | 1.01 | 0.70 | 1.17 | -2.70 | Concordant | |||
| KMT2A_HUMAN | 2.62 | -0.58 | 1.25 | -1.87 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Nerve_Tibial