rs13151671 chr4:86892076 G>A

Sequence
gagtcccctacccttccccggacg[G/A]acgcgcagggcccgggaggaactg
ASB in cell types
22RV1 (prostate carcinoma) foreskin keratinocyte GBM39 (Human brain tumor)
ASB for transcription factors
ANDR_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.83 0.18 3.1·10-30.96 1.80 n/a No Hit
CTCF_HUMAN 1.28 0.32 0.031.00 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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