rs13155109 chr5:154075444 C>T
- Sequence
ctgctgaatgagccaggaggatga[C/T]gaaatcagacttctcagaaaatgg
- ASB in cell types
- K562 (myelogenous leukemia) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- ATF4_HUMAN CEBPG_HUMAN ATF3_HUMAN ATF7_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF4_HUMAN | n/a | 2.23 | 2.00 | 4.22 | Concordant | |||
| CEBPG_HUMAN | -4.84 | 2.66 | 2.00 | 3.36 | Concordant | |||
| ATF3_HUMAN | n/a | 1.17 | 2.00 | -0.41 | Weak Discordant | |||
| ATF7_HUMAN | -0.86 | 2.29 | 1.50 | -1.44 | Weak Discordant | |||
| SMCA4_HUMAN | 0.17 | 0.94 | 1.35 | n/a | n/a |
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Motif analysis
