rs13157941 chr5:160345460 A>G

Sequence
caatctagaaaatagcctgagacc[A/G]gggtgtatctcccagcctccatgc
ASB in cell types
neutrophils from periferal blood HEK293 (embryonic kidney) A549 (lung carcinoma) epidermal keratinocytes
ASB for transcription factors
JUN_HUMAN SMC3_HUMAN STAG2_HUMAN CDN1B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
JUN_HUMAN -0.06 1.31 1.001.6·10-3 2.00 n/a No Hit
SMC3_HUMAN 0.36 0.96 1.000.02 1.80 n/a n/a
STAG2_HUMAN -0.44 1.80 1.000.03 1.33 n/a n/a
CDN1B_HUMAN 0.15 1.45 0.950.03 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  serum creatinine,  triglycerides,  triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Breast_Mammary_Tissue,  Esophagus_Muscularis,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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