rs13161202 chr5:116882797 T>C
- Sequence
aagatcctgctcttaggaagctta[T/C]gttctagataaggaaacaaaccat
- ASB in cell types
- 22RV1 (prostate carcinoma) CWR22 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.60 | 0.32 | 1.86 | -2.12 | Concordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), autism, hdl cholesterol change with statins, homa-b