rs13161948 chr5:180704514 C>T
- Sequence
tcttggtcagcatacaaaaataca[C/T]gtgccctccaaggaaatgctgagc
- ASB in cell types
- K562 (myelogenous leukemia) VCaP (prostate carcinoma)
- ASB for transcription factors
- SOX6_HUMAN KDM1A_HUMAN MNT_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SOX6_HUMAN | 2.02 | n/a | 2.00 | n/a | No Hit | |||
| KDM1A_HUMAN | 1.31 | -0.81 | 2.00 | n/a | n/a | |||
| MNT_HUMAN | 2.07 | -0.18 | 2.00 | -2.50 | Concordant | |||
| FOXA1_HUMAN | -0.14 | 1.77 | 2.00 | n/a | No Hit | |||
| HDAC1_HUMAN | 1.35 | -0.04 | 2.00 | n/a | n/a |
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Motif analysis
