rs13173083 chr5:58182087 G>A
- Sequence
ttatccaaggaagtacaaatttcc[G/A]tgctaaagaaatgtgactgtttgc
- ASB in cell types
- LNCaP (prostate carcinoma) VCaP (prostate carcinoma) T47D (invasive ductal carcinoma) ZR-75-1 (invasive ductal carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN A2NVP9_HUMAN ESR1_HUMAN GATA3_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.66 | -0.02 | 1.88 | n/a | No Hit | |||
| A2NVP9_HUMAN | 2.35 | -1.65 | 1.50 | n/a | n/a | |||
| ESR1_HUMAN | 1.42 | -0.10 | 1.33 | n/a | No Hit | |||
| GATA3_HUMAN | 1.67 | 0.03 | 1.25 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP college completion, obesity with early age of onset (age >2), rheumatoid arthritis, total cholesterol, urinary albumin-to-creatinine ratio, years of education