rs13176353 chr5:1801312 G>C

Sequence
cctctgccccgacccgcgctcccc[G/C]cccccagggcgaaataaataccgg
ASB in cell types
HepG2 (hepatoblastoma) MDA231-LM2-4175 (breast adenocarcinoma) 22RV1 (prostate carcinoma) MDA-MB-453 (breast adenocarcinoma)
ASB for transcription factors
TYY1_HUMAN E2F1_HUMAN ANDR_HUMAN FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TYY1_HUMAN n/a 3.39 1.001.6·10-9 3.00 n/a No Hit
E2F1_HUMAN 3.38 n/a 6.3·10-51.00 1.00 -3.79 Concordant
ANDR_HUMAN -1.79 3.11 1.002.8·10-4 2.00 n/a No Hit
FOXA1_HUMAN 2.66 -4.57 5.3·10-41.00 1.50 n/a No Hit
CTCF_HUMAN 1.04 0.22 2.3·10-31.00 1.04 -1.57 Weak Concordant
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Motif analysis

E2F1_HUMAN Concordant
E2F1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Esophagus_Muscularis,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Whole_Blood

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