rs13179201 chr5:36237136 C>T

Sequence
ccaaatctgttaaaactttatatg[C/T]acaaggcttttgactcaacaattt
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
ZBT40_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZBT40_HUMAN -2.72 2.64 1.003.7·10-4 1.00 -0.71 Weak Discordant
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Motif analysis

ZBT40_HUMAN Weak Discordant
ZBT40_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Brain_Amygdala,  Brain_Cerebellar_Hemisphere,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Skin_Not_Sun_Exposed_Suprapubic,  Stomach

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