rs13180605 chr5:80247480 G>A
- Sequence
ctacagactggcctctcctcaacc[G/A]tgcctacaaagtcagacttgctgc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma) HCASMC (Human coronary artery smooth muscle cells) HUVEC-C (HUVEC, umbilical vein endothelial cells)
- ASB for transcription factors
- TCF21_HUMAN IKZF2_HUMAN ESR1_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TCF21_HUMAN | 1.95 | n/a | 2.00 | n/a | No Hit | |||
| IKZF2_HUMAN | -2.75 | 2.65 | 1.00 | n/a | n/a | |||
| ESR1_HUMAN | 2.86 | -0.15 | 2.00 | n/a | No Hit | |||
| GCR_HUMAN | 1.23 | -0.01 | 2.00 | n/a | No Hit | |||
| TF65_HUMAN | 2.25 | -0.37 | 3.00 | n/a | No Hit |
Items per page:
1 – 5 of 6