rs13180781 chr5:112707375 A>G
- Sequence
tgagactcggctgcctaggcagca[A/G]tggctcacgggacagaacagcgaa
- ASB in cell types
- HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma) CD14+ monocytes MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- TYY1_HUMAN ANDR_HUMAN STAT1_HUMAN SPT5H_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 3.05 | -0.44 | 1.75 | -4.55 | Concordant | |||
| ANDR_HUMAN | 3.00 | -4.74 | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 3.17 | n/a | 2.00 | n/a | No Hit | |||
| SPT5H_HUMAN | 1.03 | 0.46 | 1.00 | n/a | n/a | |||
| SP130_HUMAN | -2.06 | 2.33 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Muscularis, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood