rs13186694 chr5:146138151 T>C
- Sequence
aaaaaaaaaaagtgaaactgttta[T/C]gctcaagatgaaacagaattctat
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- ATF7_HUMAN ATF2_HUMAN FOXA2_HUMAN FOXP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF7_HUMAN | -2.00 | 2.34 | 1.00 | n/a | No Hit | |||
| ATF2_HUMAN | -2.06 | 2.46 | 1.00 | n/a | No Hit | |||
| FOXA2_HUMAN | -1.51 | 1.17 | 1.42 | 2.03 | Concordant | |||
| FOXP1_HUMAN | -1.35 | 2.00 | 1.00 | 2.33 | Concordant | |||
| SKI_HUMAN | -2.43 | 2.54 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP body mass index (bmi), fasting blood glucose, microalbuminuria, obesity with early age of onset (age >2), urinary albumin-to-creatinine ratio, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood