rs13191012 chr6:5261059 G>A
- Sequence
agccgctccacgcggcgggagggc[G/A]gggaaataagaggactggccgccc
- ASB in cell types
- adrenal gland GM12892 (female B-cells lymphoblastoid cell line) GM19240 (B cells Lymphoblastoid Cell Lines) foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN ZFX_HUMAN RBM25_HUMAN SP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.46 | 2.48 | 2.33 | n/a | No Hit | |||
| ZFX_HUMAN | -0.03 | 1.85 | 1.07 | n/a | No Hit | |||
| RBM25_HUMAN | n/a | 2.04 | 2.00 | n/a | n/a | |||
| SP1_HUMAN | 1.99 | 0.50 | 1.30 | -3.58 | Concordant | |||
| ZN143_HUMAN | n/a | 2.30 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Pancreas, Thyroid, Whole_Blood