rs13193433 chr6:49667176 A>G

Sequence
ggtaaccaaggaagggtgatagga[A/G]gtgaggtcagagatttaggtgggg
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
ARI1B_HUMAN ATF3_HUMAN ZEB2_HUMAN TIF1A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ARI1B_HUMAN n/a 2.74 1.001.4·10-10 3.00 n/a n/a
ATF3_HUMAN 0.26 1.06 0.811.6·10-3 3.00 1.31 Weak Concordant
ZEB2_HUMAN n/a 3.06 1.003.0·10-3 3.00 4.40 Concordant
TIF1A_HUMAN n/a 2.50 1.000.01 3.00 n/a n/a
IKZF1_HUMAN n/a 2.95 1.000.02 3.00 n/a n/a
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Motif analysis

ZEB2_HUMAN Concordant
ZEB2_HUMAN pic

Genetic associations

GRASP left ventricular wall thickness (lv wall thickness),  refractive error
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Muscle_Skeletal,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Small_Intestine_Terminal_Ileum,  Testis,  Thyroid,  Whole_Blood

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