rs13194997 chr6:158168576 C>T
- Sequence
gcggggccgcacggcagtcccccc[C/T]tcgtttaatcgtgggtttcctgtg
- ASB in cell types
- 22RV1 (prostate carcinoma) primary B-CLL cells thymus-derived CD34- cells HepG2 (hepatoblastoma)
- ASB for transcription factors
- ANDR_HUMAN BRD4_HUMAN TYY1_HUMAN BC11B_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 3.32 | -0.32 | 1.67 | n/a | No Hit | |||
| BRD4_HUMAN | 1.95 | -4.55 | 2.00 | n/a | n/a | |||
| TYY1_HUMAN | -0.76 | 2.06 | 1.67 | n/a | No Hit | |||
| BC11B_HUMAN | 2.11 | 0.08 | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | -0.61 | 1.54 | 1.11 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Lung, Nerve_Tibial, Pituitary, Spleen, Testis, Thyroid, Whole_Blood