rs13196478 chr6:49667286 A>G

Sequence
aagcagttatgacaactcttgaaa[A/G]ataagatttttcctgcctaatctt
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
ATF3_HUMAN ZEB2_HUMAN ATF7_HUMAN TAL1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF3_HUMAN n/a 1.47 1.002.2·10-5 3.00 n/a No Hit
ZEB2_HUMAN n/a 3.06 1.004.2·10-4 3.00 n/a No Hit
ATF7_HUMAN n/a 2.66 1.009.0·10-4 3.00 n/a No Hit
TAL1_HUMAN n/a 3.48 1.001.7·10-3 3.00 2.67 Concordant
SMCA4_HUMAN 0.17 2.41 0.756.8·10-3 3.00 n/a n/a
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Motif analysis

TAL1_HUMAN Concordant
TAL1_HUMAN pic

Genetic associations

GTEx eQTL Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Muscle_Skeletal,  Prostate,  Small_Intestine_Terminal_Ileum,  Thyroid,  Whole_Blood

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