rs13196874 chr6:3912041 C>T

Sequence
ctccctatgcactttaaacattcc[C/T]tgtgatgtgtcaccagactttatc
ASB in cell types
K562 (myelogenous leukemia) HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma) renal cortex
ASB for transcription factors
ATF3_HUMAN SMCA4_HUMAN IKZF1_HUMAN ZEB2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF3_HUMAN 0.91 2.38 0.672.6·10-7 2.12 n/a No Hit
SMCA4_HUMAN 0.60 2.20 0.681.3·10-6 1.55 n/a n/a
IKZF1_HUMAN n/a 2.09 1.001.4·10-6 3.00 n/a n/a
ZEB2_HUMAN n/a 3.30 1.004.5·10-5 3.00 n/a No Hit
REQU_HUMAN -0.61 1.74 0.951.1·10-4 2.33 n/a n/a
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Motif analysis

TEAD3_HUMAN Discordant
TEAD3_HUMAN pic

Genetic associations

GRASP infant head circumference,  irritible bowel syndrome,  maternal transmission distortion,  triglycerides
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Heart_Left_Ventricle,  Pancreas,  Stomach

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