rs13197301 chr6:135497787 A>G
- Sequence
gcctgctgacgtcagcgcctgcct[A/G]cgccgccgttcccatggcgaccga
- ASB in cell types
- HepG2 (hepatoblastoma) CD14+ monocytes adult erythroblasts primary B-CLL cells
- ASB for transcription factors
- CREB1_HUMAN TYY1_HUMAN STAT1_HUMAN RBBP5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 2.26 | -1.82 | 2.00 | n/a | No Hit | |||
| TYY1_HUMAN | -2.26 | 2.97 | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 3.29 | n/a | 2.00 | n/a | No Hit | |||
| RBBP5_HUMAN | 2.99 | n/a | 3.00 | n/a | n/a | |||
| AHR_HUMAN | 1.99 | -0.80 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Uterus, Whole_Blood