rs13197674 chr6:52995609 T>C

Sequence
aggtttatatagcttgtgcgccgc[T/C]tgggtacctcggatgtgagggcga
ASB in cell types
CD14+ monocytes HepG2 (hepatoblastoma) breast tumor xenograft
ASB for transcription factors
STAT1_HUMAN RBM25_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 3.89 n/a 3.6·10-61.00 2.00 n/a No Hit
RBM25_HUMAN -0.37 2.62 1.004.2·10-4 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP fasting insulin,  homa-ir,  obesity with early age of onset (age >2)
GTEx eQTL Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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