rs13199630 chr6:149989361 T>G
- Sequence
ttttttgagacggagtttcgctat[T/G]gtcgcccaggctggagtgcagtcg
- ASB in cell types
- TTC-1240 (Rhabdoid tumor of the kidney) HDF(human dermal fibroblasts)
- ASB for transcription factors
- EZH2_HUMAN SUZ12_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EZH2_HUMAN | 1.98 | -1.21 | 1.00 | n/a | n/a | |||
| SUZ12_HUMAN | 2.11 | -1.47 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Hippocampus, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Prostate, Thyroid, Uterus