rs13200115 chr6:87742216 C>T
- Sequence
gccacttccaagatggctcaccca[C/T]gtggctgttgtgggcaggaggcct
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- USF2_HUMAN RAD51_HUMAN SMCA4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| USF2_HUMAN | 2.58 | -2.24 | 1.00 | -1.52 | Weak Concordant | |||
| RAD51_HUMAN | 1.35 | -0.58 | 1.50 | n/a | n/a | |||
| SMCA4_HUMAN | -0.23 | 1.48 | 2.78 | n/a | n/a |
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Motif analysis
