rs13200192 chr6:170606038 G>A
- Sequence
ctgtacgctggccagaacctctcc[G/A]tcatgggtggtctcttatcaggca
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- REQU_HUMAN IKZF1_HUMAN NFIC_HUMAN ARI1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| REQU_HUMAN | 2.59 | -1.94 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | 1.97 | -1.64 | 1.00 | n/a | n/a | |||
| NFIC_HUMAN | 2.68 | -2.33 | 1.00 | n/a | No Hit | |||
| ARI1B_HUMAN | 1.89 | -1.72 | 1.00 | n/a | n/a | |||
| HDAC2_HUMAN | 2.20 | -1.78 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood