rs13200858 chr6:49668416 A>G
- Sequence
aacaaaatacttgtcattcttcaa[A/G]tatttgctcaggcttttccctcct
- ASB in cell types
- LNCaP (prostate carcinoma) breast tumor pancreatic ductal adenocarcinoma LNCaP C4-2 (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN ESR1_HUMAN FOXA2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 2.83 | -0.85 | 1.92 | -0.84 | Weak Concordant | |||
| ANDR_HUMAN | 2.72 | -1.39 | 2.87 | -0.20 | Weak Concordant | |||
| ESR1_HUMAN | 3.75 | 0.11 | 1.50 | n/a | No Hit | |||
| FOXA2_HUMAN | 1.35 | -1.09 | 3.38 | -5.50 | Concordant |
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Motif analysis
