rs13201167 chr6:151452369 T>C

Sequence
ccttcgtccccggaagattgggtc[T/C]tctggcgagccactgtttgccgtt
ASB in cell types
K562 (myelogenous leukemia) HepG2 (hepatoblastoma) neural cell
ASB for transcription factors
TYY1_HUMAN HCFC1_HUMAN RBM25_HUMAN ZBT11_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TYY1_HUMAN 2.55 1.06 2.8·10-41.00 1.50 n/a No Hit
HCFC1_HUMAN 1.98 0.05 3.5·10-41.00 1.75 n/a n/a
RBM25_HUMAN 1.66 1.27 3.5·10-31.00 2.00 n/a n/a
ZBT11_HUMAN -1.00 1.55 1.000.02 1.00 n/a n/a
GABP1_HUMAN -0.20 0.89 1.000.02 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP mitral annular calcium,  years of education
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Lung,  Muscle_Skeletal,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Thyroid,  Whole_Blood

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