rs13202830 chr6:154257211 C>T

Sequence
cacaactagcaaaatgtgtcatct[C/T]aggcagtgatttggcaactgtttc
ASB in cell types
CD14+ monocytes macrophages form periferal blood EOL-1 (Acute myeloid leukemia)
ASB for transcription factors
STAT1_HUMAN TF65_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 3.57 n/a 1.2·10-61.00 2.00 n/a No Hit
TF65_HUMAN 2.08 n/a 0.011.00 2.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP adiponectin levels,  eye color,  hdl cholesterol,  hypertension (early onset hypertension),  infant head circumference,  years of education
GTEx eQTL Artery_Coronary

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