rs13206420 chr6:161315358 G>A
- Sequence
gcacaggctaaactaattctgatt[G/A]gctaatttaaagagcgtgaggggg
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- KAISO_HUMAN KDM1A_HUMAN CHAP1_HUMAN C2D1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KAISO_HUMAN | 3.48 | -3.17 | 1.00 | n/a | No Hit | |||
| KDM1A_HUMAN | 1.92 | -1.10 | 1.00 | n/a | n/a | |||
| CHAP1_HUMAN | 2.27 | -2.34 | 1.25 | n/a | n/a | |||
| C2D1A_HUMAN | 2.59 | -2.29 | 1.00 | n/a | n/a | |||
| GMEB1_HUMAN | 2.39 | -2.06 | 1.00 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Esophagus_Mucosa