rs13207508 chr6:2246384 G>A
- Sequence
tcgttggacagggagaggagagga[G/A]gtgactcagagccgggagggcagc
- ASB in cell types
- MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) MDA-MB-231 (breast adenocarcinoma) MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line) HUVEC-C (HUVEC, umbilical vein endothelial cells)
- ASB for transcription factors
- JUN_HUMAN CDN1B_HUMAN TF65_HUMAN GABPA_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | -0.84 | 1.96 | 1.20 | -0.39 | Weak Discordant | |||
| CDN1B_HUMAN | -0.02 | 1.50 | 1.17 | n/a | n/a | |||
| TF65_HUMAN | 2.63 | n/a | 3.00 | n/a | No Hit | |||
| GABPA_HUMAN | n/a | 1.88 | 2.00 | 5.19 | Concordant | |||
| SPI1_HUMAN | n/a | 2.40 | 2.00 | 7.64 | Concordant |
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Motif analysis
