rs13208369 chr6:117449949 T>G
- Sequence
agatggcaccacttcactccagcc[T/G]gggtgacggaagcaagaccctgtc
- ASB in cell types
- GM02255 (Lymphoblastoid Cell Lines) OCI-LY7 (diffuse large B-cell lymphoma) Peyer's patch MCF7L-P(immortalized breast epithelial cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.88 | 0.63 | 1.20 | n/a | No Hit | |||
| STAG1_HUMAN | 0.53 | -0.09 | 1.06 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood