rs13209786 chr6:131099900 A>G

Sequence
tggccacataaatgtcttcttttg[A/G]gaagtgtttgttcatatcctttgc
ASB in cell types
LNCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 2.07 -0.19 9.6·10-141.00 1.58 n/a No Hit
ANDR_HUMAN 1.28 0.16 1.2·10-31.00 1.61 -0.31 Weak Concordant
Items per page:
1 – 2 of 2

Motif analysis

ANDR_HUMAN Weak Concordant
ANDR_HUMAN pic

Genetic associations

GTEx eQTL Adrenal_Gland,  Heart_Left_Ventricle,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Whole_Blood

Download